Altschul S.F., Madden T.L., Schäffer A.A., Zhang J., Zhang Z., Miller W., Lipman D.J. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Research 25 (17): 3389-3402. DOI: 10.1093/nar/25.17.3389 Antao T., Lopes A., Lopes R.J., Beja-Pereira A., Luikart G. 2008. LOSITAN: a workbench to detect molecular adaptation based on a Fst-outlier method. BMC Bioinformatics 9: 323. DOI: 10.1186/1471-2105-9-323 Barreneche T, Casasoli M, Russell K, Akkak A, Meddour H, Plomion C, Villani F, Kremer A (2004) Comparative mapping between Quercus and Castanea using simple-sequence repeats (SSRs). Theor Appl Genet 108 (3):558-566 DOI: 10.1007/s00122-003-1462-2 Brownstein MJ, Carpten JD, Smith JR (1996) Modulation of non-templated nucleotide addition by Taq DNA polymerase: primer modifications that facilitate genotyping. BioTechniques 20 6:1004-1006, 1008-1010 DOI: 10.2144/96206st01 Burger K, Müller M, Gailing O (submitted) Characterization of EST-SSRs for European beech (Fagus sylvatica L.) and their transferability to Fagus orientalis Lipsky, Castanea dentata Bork., and Quercus rubra L. Earl DA, vonHoldt BM (2012) STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method. Conserv Genet Resour 4 (2):359-361 DOI: 10.1007/s12686-011-9548-7 Ellis JR, Burke JM (2007) EST-SSRs as a resource for population genetic analyses. Heredity 99:125. DOI: 10.1038/sj.hdy.6801001 Evanno G, Regnaut S, Goudet J (2005) Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol Ecol 14 (8):2611-2620. DOI: 10.1111/j.1365-294X.2005.02553.x Giraudoux P (2017) pgirmess: data analysis in ecology. R package version 1.6.7. [online]. To be found in <https://CRAN.R-roject.org/package=pgirmess> Goudet J (1995) FSTAT (Version 1.2): a computer program to calculate F-statistics. J Hered 86 (6):485-486. DOI: 10.1093/oxfordjournals.jhered.a111627 Konar A, Choudhury O, Bullis R, Fiedler L, Kruser JM, Stephens MT, Gailing O, Schlarbaum S, Coggeshall MV, Staton ME, Carlson JE, Emrich S, Romero-Severson J (2017) High-quality genetic mapping with ddRADseq in the non-model tree Quercus rubra. BMC Genomics 18 (1):417. DOI: 10.1186/s12864-017-3765-8 Kopelman NM, Mayzel J, Jakobsson M, Rosenberg NA, Mayrose I (2015) CLUMPAK: a program for identifying clustering modes and packaging population structure inferences across K. Mol Ecol Resour 15 (5):1179-1191 DOI: 10.1111/1755-0998.12387 Kubisiak TL, Nelson CD, Staton ME, Zhebentyayeva T, Smith C, Olukolu BA, Fang GC, Hebard FV, Anagnostakis S, Wheeler N, Sisco PH, Abbott AG, Sederoff RR (2013) A transcriptome-based genetic map of Chinese chestnut (Castanea mollissima) and identification of regions of segmental homology with peach (Prunus persica). Tree Genet Genomes 9 (2):557-571. DOI: 10.1007/s11295-012-0579-3 Lalagüe H, Csilléry K, Oddou-Muratorio S, Safrana J, de Quattro C, Fady B, González-Martínez SC, Vendramin GG (2014) Nucleotide diversity and linkage disequilibrium at 58 stress response and phenology candidate genes in a European beech (Fagus sylvatica L.) population from southeastern France. Tree Genet Genomes 10 (1):15. DOI: 10.1007/s11295-013-0658-0 Lind JF, Gailing O (2013) Genetic structure of Quercus rubra L. and Quercus ellipsoidalis E. J. Hill populations at gene-based EST-SSR and nuclear SSR markers. Tree Genet Genomes 9 (3):707-722. DOI: 10.1007/s11295-012-0586-4 Magni CR, Ducousso A, Caron H, Petit RJ, Kremer A (2005) Chloroplast DNA variation of Quercus rubra L. in North America and comparison with other Fagaceae. Molecular Ecology 14 (2):513-524. DOI: 10.1111/j.1365-294X.2005.02400.x Müller M, Finkeldey R (2016) Genetic and adaptive trait variation in seedlings of European beech provenances from Northern Germany. Silvae Genet 65 (2):65-73. DOI: 10.1515/sg-2016-0018 Peakall R, Smouse PE (2006) genalex 6: genetic analysis in Excel. Population genetic software for teaching and research. Mol Ecol Notes 6 (1):288-295. DOI: 10.1111/j.1471-8286.2005.01155.x Peakall R, Smouse PE (2012) GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research – an update. Bioinformatics 28 (19):2537-2539. DOI: 10.1093/bioinformatics/bts460 Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics 155 (2):945-959 Rice WR (1989) Analyzing Tables of Statistical Tests. Evolution 43 (1):223-225. DOI: 10.1111/j.1558-5646.1989.tb04220.x Rousset F (2008) genepop'007: a complete re-implementation of the genepop software for Windows and Linux. Mol Ecol Resour 8 (1):103-106. DOI: 10.1111/j.1471-8286.2007.01931.x Schuelke M (2000) An economic method for the fluorescent labeling of PCR fragments. Nat Biotechnol 18 (2):233-234. DOI: 10.1038/72708 Steinkellner H, Lexer C, Turetschek E, Glössl J (1997) Conservation of (GA)n microsatellite loci between Quercus species. Molecular Ecology 6 (12):1189-1194. DOI: 10.1046/j.1365-294X.1997.00288.x Sullivan AR, Lind JF, McCleary TS, Romero-Severson J, Gailing O (2013) Development and characterization of genomic and gene-based microsatellite markers in north American red oak species. Plant Molecular Biology Reporter 31 (1):231-239. DOI: 10.1007/s11105-012-0495-6 The Hardwood Genomics Project To be found in <https://hardwoodgenomics.org/> USDA NRCS (2002) Plant guide, northern red oak (Quercus rubra L.) [online]. To be found in <https://plants.usda.gov/plantguide/pdf/cs_quru.pdf> Weir BS, Cockerham CC (1984) Estimating F-statistics for the analysis of population structure. Evolution 38 (6):1358-1370